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🧬Omics & Bioinformatics Demo

RNA-seq Differential Expression Analysis

Interactive visualization of RNA-seq results. Explore differential expression data, adjust thresholds, and query results in real-time.

Total Genes

18,432

Upregulated

1,234

Downregulated

987

Not Significant

16,211

Filter Controls

0.0010.1
0.53.0
15 genes pass current thresholds (padj < 0.050, |LFC| > 1.0)

Volcano Plot: Treated vs Control

TP53MYCBRCA1EGFRKRASPIK3CAPTENBRAFAKT1NOTCH1MAPK1STAT3JAK2VEGFAHIF1Alog2 Fold Change-log10(adjusted p-value)

Technologies Used

Workflow Management

  • • Snakemake
  • • Nextflow
  • • Docker containers

Analysis Tools

  • • Python + Pandas
  • • SciPy + scikit-learn
  • • DESeq2 (R)

Data Storage

  • • PostgreSQL
  • • DuckDB
  • • RESTful APIs

Interested in Custom Omics Analysis?

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